Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLPPGSNGTAYPGQFALYQQLAQGNAVGGSAGAPPLGPSQVVTACLLTLLIIWTLLGNVLVCAAIVRSRHLRANMTNVFIVSLAVSDLFVALLVMPWKAVAEVAGYWPFGAF-CDVWVAFDIMCSTASILNLCVISVDRYWAISRPFRYKRKMTQRMALVMVGLAWTLSILISFIPVQLNWHRDQAASWGGLDLPNNLANWTPWEEDFWEPDVNAENCDSSLNRTYAISSSLISFYIPVAIMIVTYTRIYRIAQVQIRRISSLERAAEHAQSCRSSAACAPDTSLRASIKKETKVLKTLSVIMGVFVCCWLPFFILNCMVPFCSGHPEGPPAGFPCVSETTFDVFVWFGWANSSLNPVIYAFNADFQKVFAQLLGCSHFCSRTPVETVNISNELISYNQDIVFHKEIAAAYIHMMPNAVTPGNREVDNDEEEGPFDRMFQIYQTSPDGDPVAESVWELDCEGEISLDKITPFTPNGFH |
2YCY Chain:B ((17-298)) | ---------------------------------------------LMALVVLLIVAGNVLVIAAIGSTQRLQ-TLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDED--------PQAL-------KCYQDPGC----CDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKI---DRASKRK---------------RVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVF----------NRDLVPDWLFVAFNWLGYANSAMNPIIYCRSPDFRKAFKRLLAF------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -239241 for 2105 contacts (-113.7/contact) +
2D Compatibility (PS) -28637 + (NN) -4853 + (LL) 7552
1D Compatibility (HY) -37200 + (ID) 6700
Total energy: -309079.0 ( -146.83 by residue)
QMean score : 0.378
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