Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVTCGDVTSAVAPCMSYATGQ----TSA-----PSAGCCSGVRTLNAKASTSADRQAACRCLKKLAGS-----GI------------------SMGNAANIPGKCGVSVSFPINTKVDCNTLH
1B1U Chain:A ((15-109))
--------NPLDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAI--------PAYCRCEAVRILMDGVVTPSGQHEGRLLQDLPGCPRQVQRAFAPKLVTEVECNLATIH------------
General information:
TITO was launched using:
RESULT:
Template:
1B1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32209 for 401 contacts (-80.3/contact) +
2D Compatibility (PS) -6253 + (NN) 437 + (LL) 1316
1D Compatibility (HY) -2800 + (ID) 450
Total energy: -39959.0 ( -99.65 by residue)
QMean score : 0.321
(partial model without unconserved sides chains):
PDB file :
Tito_1B1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B1U-query.scw
PDB file :
Tito_Scwrl_1B1U.pdb
: