Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VVVARAALSCSTVYNTLLPCLPYVQS---GGAV-----------PAACCGGIRSVVAAARTTADRRAACTCLKNVAAGAA---GGP-------YISRAAGLPGRCGVSVPFKISPNVNCNAVN
2LVF Chain:A ((16-101))
--------------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM--------DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS---------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35659 for 353 contacts (-101.0/contact) +
2D Compatibility (PS) -6567 + (NN) -463 + (LL) 3140
1D Compatibility (HY) -5600 + (ID) 700
Total energy: -45849.0 ( -129.88 by residue)
QMean score : 0.220
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: