Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAM----GGLR-----PDLVAGIPSKCGVNIPYAISPSTDCSRVH
3OB4 Chain:A ((428-485))
------------------------QERCCNELNEFE------NNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAP-------------
General information:
TITO was launched using:
RESULT:
Template:
3OB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9846 for 261 contacts (-37.7/contact) +
2D Compatibility (PS) -4960 + (NN) -119 + (LL) 2936
1D Compatibility (HY) -2000 + (ID) 500
Total energy: -14489.0 ( -55.51 by residue)
QMean score : 0.281
(partial model without unconserved sides chains):
PDB file :
Tito_3OB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OB4-query.scw
PDB file :
Tito_Scwrl_3OB4.pdb
: