Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------ACEVGQLTVCMPAITTGAKP----SEACCGSLRAQQACFCQYAK-DPSL-----GAYIRSPHARETLVSCGLAVPHCS-------------------------------------------------
1LU4 Chain:A ((1001-1134))
ADERLQFTATTLSGAPFD---GASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAAL
General information:
TITO was launched using:
RESULT:
Template:
1LU4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19050 for 369 contacts (-51.6/contact) +
2D Compatibility (PS) -6530 + (NN) 1330 + (LL) 456
1D Compatibility (HY) -2400 + (ID) 400
Total energy: -26594.0 ( -72.07 by residue)
QMean score : 0.393
(partial model without unconserved sides chains):
PDB file :
Tito_1LU4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LU4-query.scw
PDB file :
Tito_Scwrl_1LU4.pdb
: