Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---ATCDALQLSP--CAGAIV-GNAAP-----TAVCCSRMKAQRPCMCQYARD-PN--LKQYVNSPNGKKVLAACKVP-VPSC-----------------------------
1F9M Chain:A ((10-121))
MEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAARS
General information:
TITO was launched using:
RESULT:
Template:
1F9M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15572 for 357 contacts (-43.6/contact) +
2D Compatibility (PS) -7354 + (NN) -1852 + (LL) 0
1D Compatibility (HY) -2800 + (ID) 450
Total energy: -28028.0 ( -78.51 by residue)
QMean score : 0.255
(partial model without unconserved sides chains):
PDB file :
Tito_1F9M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F9M-query.scw
PDB file :
Tito_Scwrl_1F9M.pdb
: