Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------QDCDAGKLIVCAAAIIGGAEP-----SASCCTNLKAQRGCLCKYAS-NPAYSGYI-----NSPTTRKTLASCGIPIP--TCPQ----------------------------------------------
1LU4 Chain:A ((1001-1134))
ADERLQFTATTLSGAPFDGASLQ---------GKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAAL
General information:
TITO was launched using:
RESULT:
Template:
1LU4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17416 for 309 contacts (-56.4/contact) +
2D Compatibility (PS) -6155 + (NN) -912 + (LL) 744
1D Compatibility (HY) -3200 + (ID) 500
Total energy: -27439.0 ( -88.80 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_1LU4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LU4-query.scw
PDB file :
Tito_Scwrl_1LU4.pdb
: