Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GVVGVAGAGCNAGQLTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDP-RYGRY--------VNSPNARKAVSSCGIALPTCH-----------------------
1U78 Chain:A ((2-104))
----PRGSALSDTERAQ-LDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIKRSG
General information:
TITO was launched using:
RESULT:
Template:
1U78.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24490 for 375 contacts (-65.3/contact) +
2D Compatibility (PS) -7028 + (NN) -557 + (LL) 96
1D Compatibility (HY) -800 + (ID) 450
Total energy: -33229.0 ( -88.61 by residue)
QMean score : 0.283
(partial model without unconserved sides chains):
PDB file :
Tito_1U78.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U78-query.scw
PDB file :
Tito_Scwrl_1U78.pdb
: