Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------EDCT-VDLKGLIRECKQYVMFPASPKITPSSACCSVVQKVNSPCLCSKVTKEIEKVVC----MDKVVYVADYYK----NPLKPGSDCGSYHVPSQRR-----------------------
1N3K Chain:A ((1-130))
MAEYGTLLQDLTNNITLEDLEQLKSACKEDIPSEKSEEITTGSAWFSFLESHNK--LDKDNLSYIEHIFEISRRPDLLTMVVDYRTRVLKISEEDELDTKLTRIPSAKKYKDIIRQPSEEEIIKLAPPPKKA
General information:
TITO was launched using:
RESULT:
Template:
1N3K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39932 for 488 contacts (-81.8/contact) +
2D Compatibility (PS) -8825 + (NN) -4530 + (LL) -84
1D Compatibility (HY) -1600 + (ID) 1150
Total energy: -56121.0 ( -115.00 by residue)
QMean score : 0.303
(partial model without unconserved sides chains):
PDB file :
Tito_1N3K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N3K-query.scw
PDB file :
Tito_Scwrl_1N3K.pdb
: