Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------------------------------------------------AIGCNTVAS--KMAPCLPYVTGKGPLGGC---CGGVKGLIDAAR-----------TTPDRQAVCNCLKTLAKSYS-----GINLGNAAGLPGKCGVSIPYQISPNTDCSKVH--------
1QPO Chain:A ((116-284))
IATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAVRTGGGVNHRLGLGDAALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATY-AETGVDY---LAVGALTHSVRVLDIGLDM
General information:
TITO was launched using:
RESULT:
Template:
1QPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36494 for 460 contacts (-79.3/contact) +
2D Compatibility (PS) -8944 + (NN) -1063 + (LL) -68
1D Compatibility (HY) -2800 + (ID) 900
Total energy: -50269.0 ( -109.28 by residue)
QMean score : 0.381
(partial model without unconserved sides chains):
PDB file :
Tito_1QPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QPO-query.scw
PDB file :
Tito_Scwrl_1QPO.pdb
: