Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTCGQVQGNLAQCIGFLQKG----GV---------VPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR-G----INPNNAEALPGKCGVNIPYKISTSTNCNSIN
1S6D Chain:A ((19-97))
-------EMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLD--------EKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM---------------
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30550 for 394 contacts (-77.5/contact) +
2D Compatibility (PS) -6085 + (NN) 1567 + (LL) 1176
1D Compatibility (HY) -2800 + (ID) 650
Total energy: -37342.0 ( -94.78 by residue)
QMean score : 0.252
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: