Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---ATCSVTELMP--CSSAFT-SSAAP-----TAQCCTKLKEQSPCLCGYLKN-PT--LKQYITNPNAKKVTSTCGVP-IPNC-----------------------------
1F9M Chain:A ((10-121))
MEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAARS
General information:
TITO was launched using:
RESULT:
Template:
1F9M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17460 for 357 contacts (-48.9/contact) +
2D Compatibility (PS) -6912 + (NN) -79 + (LL) 0
1D Compatibility (HY) -4000 + (ID) 600
Total energy: -29051.0 ( -81.38 by residue)
QMean score : 0.400
(partial model without unconserved sides chains):
PDB file :
Tito_1F9M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F9M-query.scw
PDB file :
Tito_Scwrl_1F9M.pdb
: