Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------ASSCNPSALSACAPALFGRAV-----TLGCCASLRAQQPCLCQYKRDPANRAYV-----NGPAAQRFTRACGLTQMKC------------------------------------------------------
1KNG Chain:A ((50-193))
RPAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEKAL
General information:
TITO was launched using:
RESULT:
Template:
1KNG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19578 for 381 contacts (-51.4/contact) +
2D Compatibility (PS) -7280 + (NN) -625 + (LL) 0
1D Compatibility (HY) -2800 + (ID) 600
Total energy: -30883.0 ( -81.06 by residue)
QMean score : 0.293
(partial model without unconserved sides chains):
PDB file :
Tito_1KNG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KNG-query.scw
PDB file :
Tito_Scwrl_1KNG.pdb
: