Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
SVDCTTLVLSMADCLSFVSNDSTSK-------------KPEGTCCSGLKTVLGTDAECLCEAFKSS--A-----QFG-V--VLNVTKALALPSACKIKAPPASNCG
1SM7 Chain:A ((14-101))
---------HLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE---DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQI------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31368 for 402 contacts (-78.0/contact) +
2D Compatibility (PS) -6154 + (NN) 387 + (LL) 628
1D Compatibility (HY) -4000 + (ID) 750
Total energy: -41257.0 ( -102.63 by residue)
QMean score : 0.358
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: