Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------AGACGKTSPDQEAMKLAPCAMAAQDAKAAVSDSCCAQVRSIGQNPSCLC-----SVMLSDMAKASGI-KAEIAITIPKRCNIANRP--VGYKCGDYTLP------
2D5R Chain:B ((24-139))
HMQLEIQVALNFIISYLYNKLPRRRVNIFG--EELERLLKKKYEGHWYPEKPYKGSGFRCIHIGEKVDPVIEQASKESGLDIDDVRGNLPQDLSVWIDPFEVSYQIGEKGPVKVLYVD
General information:
TITO was launched using:
RESULT:
Template:
2D5R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19963 for 551 contacts (-36.2/contact) +
2D Compatibility (PS) -10458 + (NN) -10569 + (LL) -84
1D Compatibility (HY) -2800 + (ID) 600
Total energy: -44474.0 ( -80.72 by residue)
QMean score : 0.332
(partial model without unconserved sides chains):
PDB file :
Tito_2D5R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D5R-query.scw
PDB file :
Tito_Scwrl_2D5R.pdb
: