Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ACSTDLSPYKPCLPAVMGTTPPSPTKECCIAVKSA--DILCLCEAVGTTE------LPG-----LNKEAALTLPQRCGAVAFSTRVCGSK
3OB4 Chain:A ((429-485))
-------------------------ERCCNELNEFENNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAP--------
General information:
TITO was launched using:
RESULT:
Template:
3OB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20432 for 234 contacts (-87.3/contact) +
2D Compatibility (PS) -4682 + (NN) -2424 + (LL) 580
1D Compatibility (HY) -1200 + (ID) 750
Total energy: -28908.0 ( -123.54 by residue)
QMean score : 0.183
(partial model without unconserved sides chains):
PDB file :
Tito_3OB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OB4-query.scw
PDB file :
Tito_Scwrl_3OB4.pdb
: