Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ACGSSYDLAACLPAAES--D-I-------------QPSAQCCTQLSSYLATDTPEECLCQTAYSPFFQ---SG-A-------DIQFAIKIPQKCNLSYRAGIQCNGNTIPGGQ
1SM7 Chain:A ((14-101))
------HLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE-----DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQI--------------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36235 for 390 contacts (-92.9/contact) +
2D Compatibility (PS) -6318 + (NN) -1341 + (LL) 324
1D Compatibility (HY) -2000 + (ID) 800
Total energy: -46370.0 ( -118.90 by residue)
QMean score : 0.321
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: