Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ACNAMTLQPCLAASQGK-V---------------APDPACCTAIKNIGLSADGPQCLCTLATGPLAKA--NGV--------SADAAMAIPKKCGLPVPKGFMCNNKPVPGS
1SM7 Chain:A ((14-106))
-----HLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE-----DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQI--GTCPF------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42795 for 461 contacts (-92.8/contact) +
2D Compatibility (PS) -6851 + (NN) -2543 + (LL) 184
1D Compatibility (HY) -800 + (ID) 550
Total energy: -53355.0 ( -115.74 by residue)
QMean score : 0.365
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: