Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQQPANCNGQLN---QLIPCLSYVQ----GQAT--Q-------PAQSCCSGLKSIAGSNPACLCSLISANAGS------IP-G----INSTLALELPAKCNLQGLNPSLCSVFISGFLPLR
2LVF Chain:A ((6-108))
----EECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM---DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS---PMRCPMG--------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29577 for 446 contacts (-66.3/contact) +
2D Compatibility (PS) -7587 + (NN) -593 + (LL) 536
1D Compatibility (HY) -4000 + (ID) 1000
Total energy: -42221.0 ( -94.67 by residue)
QMean score : 0.417
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: