Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVDCTSQLA---PVAPCLDYVQ----GNGK--T-------PSSDCCKGLSSLVTTSPVCLCQLSEGKLNL-----SAL-G--VTVDMKRALSLPTVCKIKGADRSRCAGKLSIP
2LVF Chain:A ((7-107))
--ECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM---DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS-P--MRCPM-----
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26497 for 456 contacts (-58.1/contact) +
2D Compatibility (PS) -7830 + (NN) -73 + (LL) 760
1D Compatibility (HY) -4800 + (ID) 850
Total energy: -39290.0 ( -86.16 by residue)
QMean score : 0.290
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: