Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AELSPSQCKQERQLGINSCKAVVFGQPASPACCQRIRVSHWECVCPAFNPKLAALI--------DINKAIKIL----QTCGRKVPHHFKCGSLYFP
1PNB Chain:B ((11-69))
----------------------------REQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGT---------
General information:
TITO was launched using:
RESULT:
Template:
1PNB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25476 for 263 contacts (-96.9/contact) +
2D Compatibility (PS) -4675 + (NN) 1293 + (LL) 2056
1D Compatibility (HY) -1600 + (ID) 450
Total energy: -28852.0 ( -109.70 by residue)
QMean score : 0.224
(partial model without unconserved sides chains):
PDB file :
Tito_1PNB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PNB-query.scw
PDB file :
Tito_Scwrl_1PNB.pdb
: