Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ATVPCGTVDMKAAACVGYATGKQPKPSPACCSGLQQLAATVKTVDDKKNICRCLKNGVKAFA------GV----QDRLLSQIPTACNIKVGFPVSLNTNCET
1PNB Chain:B ((12-67))
---------------------------EQCCNELYQE--------DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQI-----------
General information:
TITO was launched using:
RESULT:
Template:
1PNB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10299 for 244 contacts (-42.2/contact) +
2D Compatibility (PS) -4620 + (NN) -378 + (LL) 2336
1D Compatibility (HY) -2800 + (ID) 650
Total energy: -16411.0 ( -67.26 by residue)
QMean score : 0.170
(partial model without unconserved sides chains):
PDB file :
Tito_1PNB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PNB-query.scw
PDB file :
Tito_Scwrl_1PNB.pdb
: