Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ATCGQLIDSLIPCITYLQG----GPGP----------SAACCGGVKKLNAAANTGPARKAACNCLKSAAGTIA----RL-------NNNQAAALPGKCGVKIPYKFSTSTNCNSIRF
2LVF Chain:A ((16-101))
-------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM--------DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS----------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27790 for 346 contacts (-80.3/contact) +
2D Compatibility (PS) -6371 + (NN) -3122 + (LL) 1296
1D Compatibility (HY) -4000 + (ID) 500
Total energy: -40487.0 ( -117.01 by residue)
QMean score : 0.382
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: