Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VITCPDTDITLTACLSYVAYP---NP---P----P-----------PQPCCDAVLDVTAQARTREDRQAVCSCLKGLMIGI------PGL----DLTALAALPKVCGANIGYEISPGMDCSKIN
1PSY Chain:A ((25-120))
--------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--RCMR----------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57956 for 464 contacts (-124.9/contact) +
2D Compatibility (PS) -6634 + (NN) -2027 + (LL) 1212
1D Compatibility (HY) 0 + (ID) 700
Total energy: -66105.0 ( -142.47 by residue)
QMean score : 0.359
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: