Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNFCKIIYGNNDNQLSEKSYKSSVCNDDLFNGNEEDFVILENEKMYKTKAEFESEGYKII
1GTD Chain:A ((61-81))
-----------------------DMCQRLLCNPVIHDYDVSINEMS---------------
General information:
TITO was launched using:
RESULT:
Template:
1GTD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1911 for 62 contacts (30.8/contact) +
2D Compatibility (PS) -2260 + (NN) -806 + (LL) 2028
1D Compatibility (HY) 0 + (ID) 50
Total energy: 823.0 ( 13.27 by residue)
QMean score : 0.358
(partial model without unconserved sides chains):
PDB file :
Tito_1GTD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GTD-query.scw
PDB file :
Tito_Scwrl_1GTD.pdb
: