Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNRIVIGISGASGSIYGMHILKALKGA-DCETHLVISRAGKTTIAHEITERLEDITSLADFYYSEEKIG---EKIA--SGS-FKTSGMIVAPCSMKTMSEIASGVTSNLLTRAADVTLKERRKLVLIVRESPLHLGHLQNMLKLTEMGAIIAPPMPAFYTKPKSLEDIISHSISKVLSLFDIKLPDFKEWQGV
1SBZ Chain:A ((1-186))
--MKLIVGMTGATGAPLGVALLQALREMPNVETHLVMSKWAKTTIELETPYSARDV-----AALAD-FSHNPADQAATISSGSFRTDGMIVIPCSMKTLAGIRAGYADGLVGRAADVVLKEGRKLVLVPREMPLSTIHLENMLALSRMGVAMVPPMPAFYNHPETVDDIVHHVVARVLDQFGLEHP---RWQGL
General information:
TITO was launched using:
RESULT:
Template:
1SBZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135243 for 1432 contacts (-94.4/contact) +
2D Compatibility (PS) -19348 + (NN) -9914 + (LL) 620
1D Compatibility (HY) -16400 + (ID) 4000
Total energy: -184285.0 ( -128.69 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_1SBZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SBZ-query.scw
PDB file :
Tito_Scwrl_1SBZ.pdb
: