Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTIIIDGKKIASGLCEKLSQRIDVLKREHSIFPCLKVIFVGNNPASQVYVRNKQKKAESIGISSETIVLPDNILENELIEKINELNNDRFVNGILVQLPLPNHINASKVINTVSVEKDVDAFHRENVGKLVKGEKNCLVPCTPKGALHLIKLVETNLSGKNAV-VIGRSNIVGKPMFHLLLQENCTVTILHSQSKDLAEYCSKADVVVTAVGKPNFVQEGWIKEGAIVIDVGINSVSIEGKTKLIGDVDFDRVKEKTKAITPVPGGVGPMTIAFLMINTVIAACLQKKVDASDFVS
3NGL Chain:C ((3-273))
---ILRGEEIAEKKAENLHGIIE----RSGLEPSLKLIQIGDNEAASIYARAKIRRGKKIGIAVD-LEKYDDISMKDLLKRIDDLAKDPQINGIMIENPLPKGFDYYEIVRNIPYYKDVDALSPYNQG-LIALNREFLVPATPRAVIDIMDYYGYH---ENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIGSMTRSSKIVVVAVGRPGFLNREMVTPGSVVIDVGINYVN----DKVVGDANFEDLSEYVEAITPVPGGVGPITATNILENVVKAAEFQKNN-------
General information:
TITO was launched using:
RESULT:
Template:
3NGL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -196411 for 2270 contacts (-86.5/contact) +
2D Compatibility (PS) -29645 + (NN) -15083 + (LL) 1640
1D Compatibility (HY) -24800 + (ID) 5000
Total energy: -269299.0 ( -118.63 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_3NGL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NGL-query.scw
PDB file :
Tito_Scwrl_3NGL.pdb
: