Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKIENPRENIAYELVNNGSKLTNENKQKILELAKKIKKEENIASILKKSGNNAKKILTITVSFNDQEEK
1PDN Chain:C ((15-46))
------------------GRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGSIRPG
General information:
TITO was launched using:
RESULT:
Template:
1PDN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3108 for 157 contacts (19.8/contact) +
2D Compatibility (PS) -3517 + (NN) -3318 + (LL) 1340
1D Compatibility (HY) -1600 + (ID) 500
Total energy: -4487.0 ( -28.58 by residue)
QMean score : 0.727
(partial model without unconserved sides chains):
PDB file :
Tito_1PDN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PDN-query.scw
PDB file :
Tito_Scwrl_1PDN.pdb
: