Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQPEKTESTGLVLNIESPILIILCILSV-AYFIYSEYSVEFTKKISKNDPFSRALKNRNKLFKRFFMIR
1ZRT Chain:D ((222-249))
---VARKQMGLV------AMVMLGLLSVMLYLTNKRLWAPYKGHKA-----------------------
General information:
TITO was launched using:
RESULT:
Template:
1ZRT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13828 for 102 contacts (-135.6/contact) +
2D Compatibility (PS) -2713 + (NN) -561 + (LL) 1540
1D Compatibility (HY) -3200 + (ID) 400
Total energy: -19162.0 ( -187.86 by residue)
QMean score : -0.082
(partial model without unconserved sides chains):
PDB file :
Tito_1ZRT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZRT-query.scw
PDB file :
Tito_Scwrl_1ZRT.pdb
: