Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGHSNKAADRNSHESRKSYMVNLFGDQWKKANQIYQQYLDNALLQNITLNQGVEKMLQTLKSHNIYLAIVSNKKNINLREEVTYFKLDSYFKRVVGSCDTAEDKPSAIPLLFALEESRLPIDRENVFFVGDSI-TDILCAQNANCL-PIIYGQPISG-----YEDLLCFQHFDKLTDFIMKYLKDR
2GFH Chain:A ((117-254))
-------------------------------------------LQHMILADDVKAMLTELRK-EVRLLLLTNGDRQTQREKIEACACQSYFDAIVIGGEQKEEKPAPSIFYHCCDLLGVQP-G-DCVMVGDTLETDIQGGLNAGLKATVWINKSGRVPLTSSPMPHYMVSSVLELPALLQSIDCKV
General information:
TITO was launched using:
RESULT:
Template:
2GFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84147 for 950 contacts (-88.6/contact) +
2D Compatibility (PS) -14299 + (NN) -7971 + (LL) 2596
1D Compatibility (HY) -9600 + (ID) 1350
Total energy: -114771.0 ( -120.81 by residue)
QMean score : 0.364
(partial model without unconserved sides chains):
PDB file :
Tito_2GFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GFH-query.scw
PDB file :
Tito_Scwrl_2GFH.pdb
: