Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLPVVHLLPNNDLAQFNYRHVKIDGILSDIELYVFAGQSGYHALSPMLLTTGRYMLVNKGIVREKEEKKAKIAKVVADGVLYCDSSKSKSWLIKNDIALNTWFTLSTEEISNELGIELEKCILWQKGFSGKLAIQPMKHLEYAITWFALSLIWLIMCIAYYRQNKCHLSS
1QGT Chain:A ((1-142))
--------MDIDPYKEFG----------ATVELLSFLPSDFFPSVRDLLDTASALYREALE----SPEHCSPHHTALRQAILCWGELMTLATWVGNNLEDPASRDLVVNYVNTNMGLKIRQLLWFHISCLTF-------GRETVLEYLVSFGVWIRTPPAYRPPNAPILST
General information:
TITO was launched using:
RESULT:
Template:
1QGT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48732 for 951 contacts (-51.2/contact) +
2D Compatibility (PS) -14411 + (NN) -1469 + (LL) 3024
1D Compatibility (HY) -7600 + (ID) 900
Total energy: -70088.0 ( -73.70 by residue)
QMean score : 0.196
(partial model without unconserved sides chains):
PDB file :
Tito_1QGT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QGT-query.scw
PDB file :
Tito_Scwrl_1QGT.pdb
: