Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVTLNTPKVDFNFTAKNFNLLGVDNKYYTLSDCCGKNGFIVMFI-CNHCPYVQSIISNLISDVDLLKKDYQVNTIAIMPNDVNEYPEDSFENMINFAKE--------NKFTFPYLIDSKQEVAKEYGAVC------------TPDFFGFNANLNLCYRGRFNDAKKEKIQNYEIGSSNLFQAMKFIAETGNSPINQKSSIGCSIKWSNSTG
2V2G Chain:A ((2-180))
-------GITLGEVFPNFEADSTIGK-LKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKK-RGVKLIALSCDN--------VADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTG-------RNFSEILRVIDSLQLTAQKK------VATPADWQPGDR
General information:
TITO was launched using:
RESULT:
Template:
2V2G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135383 for 1148 contacts (-117.9/contact) +
2D Compatibility (PS) -17187 + (NN) -6063 + (LL) 1504
1D Compatibility (HY) -5600 + (ID) 1150
Total energy: -163879.0 ( -142.75 by residue)
QMean score : 0.574
(partial model without unconserved sides chains):
PDB file :
Tito_2V2G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2V2G-query.scw
PDB file :
Tito_Scwrl_2V2G.pdb
: