Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLSVSIMDLI----PIQRGPKNWLKDKG---EEILNLVRNYKKISDQKLRKIFYLLIKSAQLSKKSSRKVEIIEIAKN--LFKAGISINIISQITGLSTDRIA--------
1BYW Chain:A ((26-135))
SRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQA-LLGAEERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK
General information:
TITO was launched using:
RESULT:
Template:
1BYW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33579 for 615 contacts (-54.6/contact) +
2D Compatibility (PS) -9782 + (NN) -393 + (LL) 120
1D Compatibility (HY) -1200 + (ID) 750
Total energy: -45584.0 ( -74.12 by residue)
QMean score : 0.231
(partial model without unconserved sides chains):
PDB file :
Tito_1BYW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BYW-query.scw
PDB file :
Tito_Scwrl_1BYW.pdb
: