Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYRIVSSNILKYKNCEPKIDESAFIAGDSHIVGKVEIGREASIWFNCVIRGDIGSIKIGDGTNIQDGTVIHVDRNPGGDTIIGDMVTVGHFCMLHACTVHDKALIGMGSIVMDHAIVESEAMVAAGSLVTHRKVIKSGEMWAGRPAKFFKKISDEEVKYITQSAQNYIMLMKKYKN
3VNP Chain:C ((3-167))
--------IYPYKGKTPQIAASAFIADYVTITGDVVIGEETSIWFNTVIRGDVAPTVIGNRVNIQDNSILH--QSPNNPLIIEDGVTVGHQVILHSAIVRKNALIGMGSIILDRAEIGEGAFIGAGSLVPPGKKIPPNTLALGRPAKVVRELTEDDIREMERIRREYVEKGQYYKA
General information:
TITO was launched using:
RESULT:
Template:
3VNP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141668 for 1401 contacts (-101.1/contact) +
2D Compatibility (PS) -18154 + (NN) -5702 + (LL) 776
1D Compatibility (HY) -13600 + (ID) 3550
Total energy: -181898.0 ( -129.83 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_3VNP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VNP-query.scw
PDB file :
Tito_Scwrl_3VNP.pdb
: