Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTTAVEATAQVVEAFGKPHVNVGTIGHVDHGKTTLTAAIT----KHYGNFVAYDQIDKAPEERKRGITIATAHVEYQTEKRHYAHVDCPGHADYVKNMIVGAAQMDAAILVVSGVDGPMPQTREHILLAKQVGVGYIVVYINKADVSDPDMIGLVEMEV-RELLSKYGFPGDEVPVVIGSALKALEDDDGEYGKKSIDKLMERLDDYVEVPPRSVDLPFLLPIEDVFSISGRGTVVTGRIEKGEIKIGDEIEIIGLKATQKTTCTGVEMFKKLLEKGSAGLNVGILLRGTKREEVERGQVLAKPGTITPHRKFKAEVYILKKEEGGRHTPFFANYQPQFYLRTTDVTGSIKLLEGKEMVMPGDNVSIEVELQVPIAMDKGLRFAIREGGRTVGSGVVSEILEWV |
4PC1 Chain:B ((10-393)) | ----------------KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGG----------------------SHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGD-AEWEAK-ILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLG-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PC1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -202216 for 2862 contacts (-70.7/contact) +
2D Compatibility (PS) -39443 + (NN) -17721 + (LL) 3716
1D Compatibility (HY) -39200 + (ID) 12850
Total energy: -307714.0 ( -107.52 by residue)
QMean score : 0.561
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