Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLEKIQSDVEDIWKNRSKLSNRSVKRAARVIIKKVIKLLDSGKIRVAERLSDGKWIVHTWIKQAISLYFLTEESKMIDHT-GWWFDKVNNKFDGWNEEEFHQSKIRAVPGCFVRQSAYVGTNVVLMPSFINVGAYISSGTMIDTWSTIGSCAQIGKNCHVSGGVGIGGVLEPIQASPVIIEDNCFIGARSEVAEGVIIREGSVLGMGVFIGASTKIIDRETNKVFYGEVPPYSVVVPGSTLSA-NNISIYCAIIVKKVDEKTRQKTSINEILRD
3GOS Chain:A ((3-274))
--MQQLQNVIETAFERRADITPANVDTVTREAITHVIDLLDTGALRVAEKI-DGQWVTHQWLKKAVLLSFRINDNQVMEGAETRYYDKVPMKFAGYDEARFQREGFRVVPPATVRKGAFIARNTVLMPSYVNIGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFVGARSEVVEGVIVEEGSVISMGVFIGQSTRIYDRETGEVHYGRVPAGSVVVSGNLPSKDGSYSLYCAVIVKKVDA------GINELLRT
General information:
TITO was launched using:
RESULT:
Template:
3GOS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -240700 for 2142 contacts (-112.4/contact) +
2D Compatibility (PS) -28550 + (NN) -10421 + (LL) 752
1D Compatibility (HY) -30000 + (ID) 7000
Total energy: -315919.0 ( -147.49 by residue)
QMean score : 0.661
(partial model without unconserved sides chains):
PDB file :
Tito_3GOS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GOS-query.scw
PDB file :
Tito_Scwrl_3GOS.pdb
: