Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIDRPLSPHLQIYKVQVTNFFSIMHRLTGILL-------FLLLVMLSWYFTLHVYFPELFIVKCLNVLLSTFIAKLVCILCFISFSYHFLNGIRHLLWDAGFNLEITDVLKSAMLLTVMLILSTMAFLFVFI
4YTP Chain:C ((49-166))
--NRPLSPHITIYRWSLPMAMSICHRGTGIALSAGVSLFGLSALLLPGNFESHL---ELVKSLCLGPTL-IYTAKFGIVFPLM---YHTWNGIRHLIWDLGKGLTIPQLTQSGVVVLILTVLSSVGLAAM--
General information:
TITO was launched using:
RESULT:
Template:
4YTP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81628 for 600 contacts (-136.0/contact) +
2D Compatibility (PS) -11440 + (NN) -6570 + (LL) 852
1D Compatibility (HY) -10800 + (ID) 2150
Total energy: -111736.0 ( -186.23 by residue)
QMean score : 0.369
(partial model without unconserved sides chains):
PDB file :
Tito_4YTP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YTP-query.scw
PDB file :
Tito_Scwrl_4YTP.pdb
: