Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIIKTIEEKIRGSIDVIDVDIIDESVKHADHYFSSSSMLPSHIKLVLISDNFAGMDSLKRHRLIYELLKSEIE-LIHAISLHLYTQSEYNLKNK
1V60 Chain:A ((31-118))
-PVEAAIRAKLEQALSPEVLELRNESGGHAVPA-----GSETHFRVAVVSSRFEGMSPLQRHRLVHEALSEELAGPVHALAIQAKTPAQWRENPQ
General information:
TITO was launched using:
RESULT:
Template:
1V60.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69239 for 618 contacts (-112.0/contact) +
2D Compatibility (PS) -9265 + (NN) -1256 + (LL) 228
1D Compatibility (HY) -2400 + (ID) 1100
Total energy: -83032.0 ( -134.36 by residue)
QMean score : 0.544
(partial model without unconserved sides chains):
PDB file :
Tito_1V60.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V60-query.scw
PDB file :
Tito_Scwrl_1V60.pdb
: