Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MISKEDLLELMKIRHSRRSYGQSKLAHQEEINMLIETAWLSPSRYGDEPWRQVICNRQSNQDAWEKLLSCPTEPNQKWAKDTQILIISLSTKNFHD--HT---------------------------------KIVNFWGSHDTGIANYTFMLQSYIYEFNAHQMSRFDRNKIVKNSIYQMILI
3OF4 Chain:A ((2-168))
----MYLEKLQQWRYATADFSG-AHITDDVLDKLLNTTRLTASSYGLQPYCTLVIRNK---GLREQLVNHS--FGQQKVADSSALVIFAAKTGAVADIVDPYISELSQQRQLTNEEAENTRNYFTQKLQAMSAATRKEWAVRQAYIGLGTFLLAAAELEVDSCPMEGIEHDAYDNILSLKDLGL
General information:
TITO was launched using:
RESULT:
Template:
3OF4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28760 for 858 contacts (-33.5/contact) +
2D Compatibility (PS) -14332 + (NN) -10154 + (LL) 588
1D Compatibility (HY) -4000 + (ID) 1150
Total energy: -57808.0 ( -67.38 by residue)
QMean score : 0.335
(partial model without unconserved sides chains):
PDB file :
Tito_3OF4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OF4-query.scw
PDB file :
Tito_Scwrl_3OF4.pdb
: