Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------MKWLDIENIAEALEEKFPGEDIVNIR--------FTKLKEKVLNLEGFSDDEKRCNEKILEAIQAAWIEERS---
2NPB Chain:A ((1-88))
MALAVRVVYSGACGYKPKYLQLKEKLEHEFPGCLDICGEGTPQVTGFFEVTVAGKLVHSKKRGDGYVDTESKFRKLVTAIKAALAQCQ
General information:
TITO was launched using:
RESULT:
Template:
2NPB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5043 for 361 contacts (14.0/contact) +
2D Compatibility (PS) -7342 + (NN) -3497 + (LL) 0
1D Compatibility (HY) 800 + (ID) 550
Total energy: -5546.0 ( -15.36 by residue)
QMean score : 0.420
(partial model without unconserved sides chains):
PDB file :
Tito_2NPB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NPB-query.scw
PDB file :
Tito_Scwrl_2NPB.pdb
: