Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSLRKNLITSESVAAGHPDKVADQISDAVLDEYLLTDPFSRTAIETLVTKDNVIIAGEVFGPNVANSTIENVVRNTIKDIGYEHD--GFHWGEVGVNMLLHEQSNDIAIGV-DQGAGDQGIMYGYATIETKSLMPAPIFYAHSILKNVMSVVKEAK----LGPDAKSQITLAYESN----LPVRAESIIVSIQHPEDLDQLKVKEIIYPYVVSSL-PKGWMCAEENFFVNPTGRFVIGGPVSDCGLTGRKIMVDTYGGYIPHGGGAFSGKDATKVDRSAAYMARYLAKNIVFANLAERCLVQLSYAIGVSKPTSFYIDTFGTNKVDEERIKKLIESNIDLSTRGIIKHLSLSRPIYKRTACYGHFGKESEEDDGFSWENLNLSLDLSREFSVQSNRKVSLDC |
| 1O9T Chain:A ((20-389)) | ------MFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEI--TSMAMIDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSP------EDVGAGDQGLMFGYATDETEECMPLTIVLAHK-LNTRMADLRRSGVLPWLRPDSKTQVTVQYVQDNGAVIPVRVHTIVISVQHNEDITLEAMREALKEQVIKAVVPAKYLDEDTIYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYAIGVAEPLSISIFTYGTSKKTERELLEVVNKNFDLRPGVIVRDLDLKKPIYQKTACYGHFGRSE-----FPWEVPKKLVF----------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1O9T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -166160 for 3062 contacts (-54.3/contact) +
2D Compatibility (PS) -36857 + (NN) -12318 + (LL) 1908
1D Compatibility (HY) -33200 + (ID) 8500
Total energy: -255127.0 ( -83.32 by residue)
QMean score : 0.483
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