Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYGTTILSIRKDKSVIVIGDGQVSLGHTVIKSGAKKVRRLSSDSVIAGFAGATADAFTLFERLESKLDKHPGQLMRACVELAKDWRMDKYLRKLEAMMIVADKSISLVITGTGDVLEP-EDGIAAIGSGGNFALSAAKALIDIKGISIEEIAKKAMKIAADICVYTNHNVVVEKIEG
1KYI Chain:R ((1-172))
---TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAHEIVEKSLRIAGDICVFTNTNFTIEELP-
General information:
TITO was launched using:
RESULT:
Template:
1KYI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142939 for 1487 contacts (-96.1/contact) +
2D Compatibility (PS) -19450 + (NN) -15068 + (LL) 232
1D Compatibility (HY) -18000 + (ID) 5250
Total energy: -200475.0 ( -134.82 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_1KYI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KYI-query.scw
PDB file :
Tito_Scwrl_1KYI.pdb
: