Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNINIKNLVHAFSKLPSLGPSSSRRLVIHLLQNKEKVMLPLASSIKELADLIIECKVCGNLDTQSPCSICTNPKRDTKLMCVVEELGDLWAFEKGSIYSGMYHVLGGRLSAINGIGPEKLNLDNIPKRVTEFKIEEVIIAINPTLEGQVTVQYIIESLKNLDVKVSRLACGIPMGGEIDYLDEGTLKAALTSRQEYESNIK
4O6O Chain:D ((18-211))
-STSVAKLIEELSKLPGIGPKTAQRLAFFIINMPLDEVRSLSQAIIEAKEKLRYGKICFNITDKEVCDICSDENRDHSTICVVSHPMDVVAMEKVKEYKGVYHVLHGVISPIEGVGPEDIRIKELLERVRDGSVKEVILATNPDIEGEATAMYIAKLLKPFGVKVTRIAHGIPVGGDLEYTDVVTLSKALEGRREV-----
General information:
TITO was launched using:
RESULT:
Template:
4O6O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112940 for 1248 contacts (-90.5/contact) +
2D Compatibility (PS) -20580 + (NN) -8980 + (LL) 500
1D Compatibility (HY) -15600 + (ID) 3650
Total energy: -161250.0 ( -129.21 by residue)
QMean score : 0.480
(partial model without unconserved sides chains):
PDB file :
Tito_4O6O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4O6O-query.scw
PDB file :
Tito_Scwrl_4O6O.pdb
: