Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLNLESLP--KHLAIIMDGNSRWANSQGRVKIDGYRKGSEVAYDIAKHCIALAIPYLTLYAFSMENWLRPKEETDCLFDLFYSILTDRDKVNFFHNYNIKLNFVGNLSLLPGKILNQIKESEEMTRKNDGLLLTVAVSYGAKQEIIHAVRNITRK------NIDCVSEDEFEKFLYTKDLPKLDLLIRTGGEKRLSNFLLWQAAYAELYFCDTLWPDFSCQDLSKALEDYTKREKRYGR
2E9D Chain:B ((17-243))
--------GCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSS----------SALMELFVWALDS--EVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRF--
General information:
TITO was launched using:
RESULT:
Template:
2E9D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134758 for 1565 contacts (-86.1/contact) +
2D Compatibility (PS) -22204 + (NN) -3416 + (LL) 1184
1D Compatibility (HY) -14400 + (ID) 4350
Total energy: -177944.0 ( -113.70 by residue)
QMean score : 0.546
(partial model without unconserved sides chains):
PDB file :
Tito_2E9D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2E9D-query.scw
PDB file :
Tito_Scwrl_2E9D.pdb
: