Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKITILAVGKLKEKYWKQAIAEYEKRLGPYTKIDIIEVPDEKAPENMSDKEIEQVKEKEGQRILAKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQ-RSNYALSFSKMTFPH-QMMRVVLIEQVYRAFKIMRGEAYHK
3IEF Chain:A ((79-153))
---------------------------------------------------------------------DSPRLLMSPRGRLLNQ-AYARSLAR-----SSGVTLVCGRFEGVDERIIEARELEEVSIGDYILSGGETAALVLLDAIVRL-----------
General information:
TITO was launched using:
RESULT:
Template:
3IEF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50451 for 457 contacts (-110.4/contact) +
2D Compatibility (PS) -8015 + (NN) -4762 + (LL) 7204
1D Compatibility (HY) -6800 + (ID) 700
Total energy: -63524.0 ( -139.00 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_3IEF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IEF-query.scw
PDB file :
Tito_Scwrl_3IEF.pdb
: