Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKYDDFIVGETFKTKSLHITEEEIIQFATT-FDPQYMHIDKEKAEQSRFKGIIASGMHTLSISFKLWVEEGKYGEEVVAGTQMNNVKFIKPVYPGNTLYVIAEITNKKSIKKENGLVTVSLSTYNENEEIVFKGEVTALINNS
1PN2 Chain:A ((167-275))
----------------VPV-SEDLAALYRLSGDRNPLHIDPNFAKGAKFPKPILHGMCTYGLSAKALIDK--FG-----MFNEIKARFTGIVFPGETLRVLAWKES-------DDTIVFQTHVVD-RGTIAINNAAIKLVG--
General information:
TITO was launched using:
RESULT:
Template:
1PN2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54648 for 780 contacts (-70.1/contact) +
2D Compatibility (PS) -11689 + (NN) -1398 + (LL) 2220
1D Compatibility (HY) -4800 + (ID) 1200
Total energy: -71515.0 ( -91.69 by residue)
QMean score : 0.416
(partial model without unconserved sides chains):
PDB file :
Tito_1PN2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PN2-query.scw
PDB file :
Tito_Scwrl_1PN2.pdb
: