Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIIYMNTIKNTIYTEAIFSKDEKHRYLLKK--------TWDEKKPACTVITMYPHLDGVLSLDLTTVLILNQLANSERYGAVYLVNLFSNIKTPENLKHIKEPYDK--HTDIHLMKAISESDTVILAYGAYAKRPVVVERVEQVMEMLKPHKKKVKKLINPATNEIMHPLNPKARQKWTLKA
4R30 Chain:A ((6-184))
QAMHYSRILPNIWLGSCPRQVEHVTIKLKHELGITAVMNFQTEWDIVQNSSGCNRYPEPMTPDTMIKLYREEGLAYIWMPTPDMSTEGRVQMLPQAVCLLHALLEKGHIVYVHSNAGVGRSTAAVCGWLQYVMGWN-LRKVQYFLMAKRPAVYIDEEALARAQEDFFQKFGKVRSSVCSL--
General information:
TITO was launched using:
RESULT:
Template:
4R30.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13248 for 1295 contacts (-10.2/contact) +
2D Compatibility (PS) -17025 + (NN) 1349 + (LL) 400
1D Compatibility (HY) -3200 + (ID) 800
Total energy: -32524.0 ( -25.12 by residue)
QMean score : 0.146
(partial model without unconserved sides chains):
PDB file :
Tito_4R30.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4R30-query.scw
PDB file :
Tito_Scwrl_4R30.pdb
: