Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEFTYSYLFRMISHEMKQKADQKLEQFDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTSIFDEMEQTLVSQLSEEENEQMKANLTKMLSSLQ
4LLL Chain:D ((4-140))
--FTYSYLFRMISHEMKQKADQKLEQFDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTSIFDEMEQTLVSQLSEEENEQMKANLTKMLSSLQ
General information:
TITO was launched using:
RESULT:
Template:
4LLL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38627 for 870 contacts (-44.4/contact) +
2D Compatibility (PS) -14229 + (NN) -3535 + (LL) 312
1D Compatibility (HY) -17600 + (ID) 6850
Total energy: -80529.0 ( -92.56 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_4LLL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LLL-query.scw
PDB file :
Tito_Scwrl_4LLL.pdb
: