Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MWSFKSMFNTPEDPEKDAYEFYGKVQPGITTPTQKTCNFVALDLKSK--DRDAIKAMFKKWTVMADRMMDGDTVGKTSNNPLMPPVDTGESIGLGASKLTITFGISKSLMKKIGLSSKIPDAFKDLPHFPNDQLIDDYSDGDIMIQACSNDSQVSFHAVHNLVRPFRDIVKVRWAQSGFISAKGKETPRNLMAFKDGTINPRKSNQLKDYVFID--DGWAKHGTYCVVRRIQIHIETWDRTALEEQEATFGRKRHSGAPLTGGKEFDEIDLKAKDSHGEYIIDKDAHTRLAKEA-NTSILRRAFNYVDGTDDRTGNFETGLLFIAFQKATKQFIDIQNNLGS------NDKLNEYITHRGSASFLVLPGVSKGGYLGETLFD |
| 2GVK Chain:A ((13-313)) | -----------------------IPQDV-AGKQGENVIFIVYNLTDSPDTVDKVKDVCANFSAMIRSMRNRFP----------------------DMQFSCTMGFGADAWTRLFPDKGKPKELSTFSEIKGEKYTAVSTPGDLLFHIRAKQMGLCFEFASILDEKLKGAVVSVDETHGFRYMD----GKAIIGFVDGTENPAVDENPYHFAVIGEEDADFAGGSYVFVQKYIHDMVAWNALPVEQQEKVIGRHKFNDVELSDE-----------------EKPGNAHNAVTNIGDDLKIVRANMPFANTSK-----GEYGTYFIGYASTFSTTRRMLENMFIGSPAGNTDRLLDFSTAITGTLFFVPSYDLLG--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GVK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -94236 for 2414 contacts (-39.0/contact) +
2D Compatibility (PS) -31366 + (NN) -14149 + (LL) 2324
1D Compatibility (HY) -12800 + (ID) 2500
Total energy: -152727.0 ( -63.27 by residue)
QMean score : 0.382
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