Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEKI
4QGG Chain:B ((2-205))
-SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERII---------DQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEKI
General information:
TITO was launched using:
RESULT:
Template:
4QGG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93989 for 1571 contacts (-59.8/contact) +
2D Compatibility (PS) -21726 + (NN) -12715 + (LL) 504
1D Compatibility (HY) -28800 + (ID) 9750
Total energy: -166476.0 ( -105.97 by residue)
QMean score : 0.690
(partial model without unconserved sides chains):
PDB file :
Tito_4QGG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QGG-query.scw
PDB file :
Tito_Scwrl_4QGG.pdb
: